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Updates to scoringutils 1.0.0 #203

Merged
merged 13 commits into from
Mar 26, 2022
Merged

Updates to scoringutils 1.0.0 #203

merged 13 commits into from
Mar 26, 2022

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nikosbosse
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  • updates to the manuscript
  • small fixes

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codecov bot commented Mar 25, 2022

Codecov Report

Merging #203 (4083b05) into master (92ecf09) will increase coverage by 0.12%.
The diff coverage is 96.29%.

@@            Coverage Diff             @@
##           master     #203      +/-   ##
==========================================
+ Coverage   56.68%   56.80%   +0.12%     
==========================================
  Files          22       22              
  Lines        1362     1366       +4     
==========================================
+ Hits          772      776       +4     
  Misses        590      590              
Impacted Files Coverage Δ
R/plot.R 17.22% <ø> (+0.03%) ⬆️
R/score.R 100.00% <ø> (ø)
R/pairwise-comparisons.R 86.99% <94.11%> (-0.41%) ⬇️
R/summarise_scores.R 69.86% <100.00%> (+0.41%) ⬆️
R/utils.R 88.23% <100.00%> (ø)

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This is all looking nice. Paper code is looking clean and figures are lovely. Do you want some feedback on the paper in the near term?

@@ -116,6 +131,9 @@
#' A data set with truth values for COVID-19 cases and deaths
#' submitted to the European Forecast Hub.
#'
#' The data was created using the script create-example-data.R in the inst/
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you love to see it.


NULL
#' @keywords internal
"_PACKAGE"
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you caved on the custom package file 😱

@@ -2,7 +2,7 @@ library(data.table)
library(dplyr)
library(devtools)
library(here)
library(covidHubUtils) # devtools::install_github("reichlab/covidHubUtils")
library(covidHubUtils) # devtools::install_github("reichlab/covidHubUtils") #nolint
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linter so mad. To skip successfully use # nolint.

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👍

system("svn checkout https://github.com/epiforecasts/covid19-forecast-hub-europe/trunk/data-processed/EuroCOVIDhub-baseline")
system("svn checkout https://github.com/epiforecasts/covid19-forecast-hub-europe/trunk/data-processed/UMass-MechBayes")
system("svn checkout https://github.com/epiforecasts/covid19-forecast-hub-europe/trunk/data-processed/epiforecasts-EpiNow2")
system("svn checkout https://github.com/epiforecasts/covid19-forecast-hub-europe/trunk/data-processed/EuroCOVIDhub-ensemble") # nolint
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if you want can instead use the scripts I wrote for downloading nowcasting. Much less ick than having to install utils.....

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I'll leave that to future Nikos 👀

@nikosbosse nikosbosse merged commit 6bc66a0 into master Mar 26, 2022
@seabbs
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seabbs commented Mar 27, 2022

Also really not a fan of this mega PR approach fyi.

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nikosbosse commented Mar 27, 2022 via email

@seabbs seabbs deleted the major-update branch March 28, 2022 10:06
@nikosbosse nikosbosse restored the major-update branch March 28, 2022 15:14
@seabbs seabbs deleted the major-update branch May 10, 2022 09:45
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2 participants